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Human aging phenome

Mapping how the body changes across a lifetime

Face at infancy Face in old age
Boy face at infancy Boy face in old age
One genome, a lifetime of change

Aging does not look the same in everyone. The human aging phenome is the full spectrum of measurable traits — molecular, physiological, cognitive and clinical — that change as people grow older, and that together describe how, and how fast, an individual is aging.

We integrate large-scale human datasets — electronic health records, biobanks, imaging, and multi-omics — to chart how thousands of age-related traits relate to one another and to underlying biological mechanisms. By linking these phenotypes back to the molecular pathways we study in the lab, we identify robust biomarkers of biological age and pinpoint which traits are most amenable to intervention.

A central tool is machine learning. We train "aging clocks" to read biological age from data such as cell-nucleus morphology, retinal and facial images, or routine clinical measurements — and to flag where a person's biological age diverges from their chronological age. The goal is a data-driven atlas of human aging that turns the diffuse experience of growing older into concrete, measurable targets for intervention.

The human pathome: from 33 million histological samples to age-modulating drugs
The human pathome (pathoage.com): 33 million histological samples and clinical pathology text are mined with machine learning to map thousands of age- and mortality-associated phenotypes, which are then cross-referenced in PubMed and tested as age-modulating interventions in cells and fruit flies.

Selected reading

  1. Heckenbach I, Mkrtchyan GV, Ezra MB, et al. & Scheibye-Knudsen M. Nuclear morphology is a deep learning biomarker of cellular senescence. Nature Aging (2022). doi:10.1038/s43587-022-00263-3
  2. Andreassen SN, Ben Ezra M, Scheibye-Knudsen M. A defined human aging phenome. Aging (Albany NY) (2019). doi:10.18632/aging.102166
  3. Ben Ezra M, Garbrecht JB, et al. & Scheibye-Knudsen M. The human pathome shows sex and tissue specific aging patterns. npj Aging (2026). doi:10.1038/s41514-025-00307-z

See the full list of the lab's publications on Google Scholar.